|
Selected genes significantly altered under low salinity growth |
|||||||
| Gene ID |
Gene name |
Former name |
COG |
Predicted function |
Fold change values |
log2(x) ratio |
Standard deviation of log2(x) ratio |
|
|
|||||||
| 101 |
cspD1 |
1278 |
cold shock protein |
1.442 |
0.502 |
0.275 |
|
| 491 |
dnaK |
443 |
heat shock protein |
-1.307 |
-0.376 |
0.172 |
|
| 727 |
dfr |
534 |
DinF-related damage-inducible protein |
-2.079 |
-1.019 |
0.316 |
|
| 1013 |
htr13 |
840 |
Htr13 transducer |
1.656 |
0.649 |
0.482 |
|
| 1121 |
aspC2 |
436 |
aspartate aminotransferase |
1.694 |
0.688 |
0.453 |
|
| 1190 |
sod1 |
605 |
superoxide dismutase |
1.826 |
0.852 |
0.221 |
|
| 1332 |
sod2 |
605 |
superoxide dismutase |
2.023 |
0.988 |
0.290 |
|
| 1408 |
ush |
737 |
UDP-sugar hydrolase |
-1.393 |
-0.468 |
0.165 |
|
| 1442 |
htr12 |
840 |
Htr12 transducer |
1.406 |
0.490 |
0.058 |
|
| 1632 |
cbiQ |
619 |
cobalt transport protein |
-1.265 |
-0.324 |
0.214 |
|
| 1634 |
cbiN |
1930 |
cobalt transport protein |
-1.553 |
-0.580 |
0.400 |
|
| 1691 |
rpl23p |
89 |
50S ribosomal protein L23P |
-1.454 |
-0.533 |
0.138 |
|
| 1692 |
rpl2p |
90 |
50S ribosomal protein L2P |
-1.515 |
-0.594 |
0.128 |
|
| 1695 |
rpl22p |
91 |
50S ribosomal protein L22P |
-1.447 |
-0.523 |
0.173 |
|
| 1698 |
rpl29p |
255 |
50S ribosomal protein L29P |
-1.460 |
-0.535 |
0.176 |
|
| 1801 |
hsp1 |
71 |
small heat shock protein |
2.248 |
1.006 |
0.679 |
|
| 1814 |
carB |
458 |
carbamoyl-phosphate synthase large subunit |
-1.590 |
-0.646 |
0.261 |
|
| 1815 |
carA |
505 |
carbamoyl-phosphate synthase small subunit |
-1.452 |
-0.520 |
0.225 |
|
| 1924 |
trkA6 |
569 |
TRK potassium uptake system protein |
2.040 |
1.006 |
0.251 |
|
| 2093 |
glnA |
174 |
glutamine synthatase |
-1.719 |
-0.766 |
0.212 |
|
| 2116 |
xup |
2252 |
xanthine/uracil permease family protein |
-1.603 |
-0.647 |
0.307 |
|
| 2139 |
atpA |
1155 |
H+-transporting ATP synthase subunit A |
-1.482 |
-0.555 |
0.189 |
|
| 2140 |
atpF |
1436 |
H+-transporting ATP synthase subunit F |
-1.536 |
-0.608 |
0.177 |
|
| 2141 |
atpC |
1527 |
H+-transporting ATP synthase subunit C |
-1.637 |
-0.694 |
0.221 |
|
| 2142 |
atpE |
1390 |
H+-transporting ATP synthase subunit E |
-1.706 |
-0.761 |
0.173 |
|
| 2143 |
atpK |
636 |
H+-transporting ATP synthase subunit K |
-1.658 |
-0.719 |
0.173 |
|
| 2144 |
atpI |
1269 |
H+-transporting ATP synthase subunit I |
-1.816 |
-0.830 |
0.295 |
|
| 2281 |
gst |
435 |
glutathione S-transferase |
1.508 |
0.573 |
0.235 |
|
| 2344 |
dppD1 |
oppD2 |
444 |
oligopeptide ABC transporter |
-1.562 |
-0.611 |
0.301 |
| 2346 |
dppC1 |
dppC2 |
1173 |
dipeptide ABC transporter permease |
-1.436 |
-0.488 |
0.307 |
| 2347 |
dppB1 |
dppB1 |
601 |
dipeptide ABC transporter permease |
-1.581 |
-0.649 |
0.182 |
| 2358 |
appA |
747 |
oligopeptide binding protein |
1.893 |
0.841 |
0.485 |
|
| 2359 |
appB |
601 |
oligopeptide ABC permease |
1.506 |
0.548 |
0.350 |
|
| 2616 |
cxp |
2317 |
Carboxypeptidase |
-2.194 |
-1.113 |
0.247 |
|
| 5076 |
trxA1 |
Thioredoxin |
-1.424 |
-0.491 |
0.235 |
||
| 5142 |
tbpC |
2101 |
transcription initiation factor IID |
1.748 |
0.743 |
0.430 |
|
| 6313 |
nhaC3 |
1757 |
Na+/H+ antiporter |
-1.280 |
-0.348 |
0.146 |
|
Coker et al. Saline Systems 2007 3:6 doi:10.1186/1746-1448-3-6 |
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